The SILVA ribosomal RNA gene database project: improved data processing and web-based tools C Quast, E Pruesse, P Yilmaz, J Gerken, T Schweer, P Yarza, J Peplies, ... Nucleic acids research 41 (D1), D590-D596 |
Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies A Klindworth, E Pruesse, T Schweer, J Peplies, C Quast, M Horn, ... Nucleic acids research 41 (1), e1-e1 |
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB E Pruesse, C Quast, K Knittel, BM Fuchs, W Ludwig, J Peplies, ... Nucleic acids research 35 (21), 7188-7196 |
SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes E Pruesse, J Peplies, FO Glöckner Bioinformatics 28 (14), 1823-1829 |
The SILVA and “all-species living tree project (LTP)” taxonomic frameworks P Yilmaz, LW Parfrey, P Yarza, J Gerken, E Pruesse, C Quast, T Schweer, ... Nucleic acids research 42 (D1), D643-D648 |
The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications RH Nilsson, KH Larsson, AFS Taylor, J Bengtsson-Palme, TS Jeppesen, ... Nucleic acids research 47 (D1), D259-D264 |
Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences P Yarza, P Yilmaz, E Pruesse, FO Glöckner, W Ludwig, KH Schleifer, ... Nature Reviews Microbiology 12 (9), 635-645 |
Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota D Bulgarelli, M Rott, K Schlaeppi, E Ver Loren van Themaat, ... Nature 488 (7409), 91-95 |
JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison M Richter, R Rosselló-Móra, F Oliver Glöckner, J Peplies Bioinformatics 32 (6), 929-931 |
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea RM Bowers, NC Kyrpides, R Stepanauskas, M Harmon-Smith, D Doud, ... Nature biotechnology 35 (8), 725-731 |
The minimum information about a genome sequence (MIGS) specification D Field, G Garrity, T Gray, N Morrison, J Selengut, P Sterk, T Tatusova, ... Nature biotechnology 26 (5), 541-547 |
Substrate-controlled succession of marine bacterioplankton populations induced by a phytoplankton bloom H Teeling, BM Fuchs, D Becher, C Klockow, A Gardebrecht, CM Bennke, ... Science 336 (6081), 608-611 |
The All-Species Living Tree project: a 16S rRNA-based phylogenetic tree of all sequenced type strains P Yarza, M Richter, J Peplies, J Euzeby, R Amann, KH Schleifer, ... Systematic and applied microbiology 31 (4), 241-250 |
Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescence in situ hybridization FO Glöckner, BM Fuchs, R Amann Applied and environmental microbiology 65 (8), 3721-3726 |
Minimum information about a biosynthetic gene cluster MH Medema, R Kottmann, P Yilmaz, M Cummings, JB Biggins, K Blin, ... Nature chemical biology 11 (9), 625-631 |
Culturability and in situ abundance of pelagic bacteria from the North Sea H Eilers, J Pernthaler, FO Glöckner, R Amann Applied and environmental microbiology 66 (7), 3044-3051 |
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications P Yilmaz, R Kottmann, D Field, R Knight, JR Cole, L Amaral-Zettler, ... Nature biotechnology 29 (5), 415-420 |
25 years of serving the community with ribosomal RNA gene reference databases and tools FO Glöckner, P Yilmaz, C Quast, J Gerken, A Beccati, A Ciuprina, G Bruns, ... Journal of biotechnology 261, 169-176 |
Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of actinobacteria FO Glöckner, E Zaichikov, N Belkova, L Denissova, J Pernthaler, ... Applied and environmental microbiology 66 (11), 5053-5065 |
Fluorescence in situ hybridization (FISH) with rRNA-targeted oligonucleotide probes J Pernthaler, FO Glöckner, W Schönhuber, R Amann Methods in microbiology 30, 207-226 |
